Find hotels in Ayios Thomas from CA $55

  • Plan, book, stay with confidence
    • bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    payments icon
    Treat yourself
    Sign in to save 10% or more on thousands of hotels
    Sign in
    today icon
    Change your mind
    Book hotels with free cancellation

Check Ayios Thomas hotel prices

Tonight
Nov 28 - Nov 29
Tomorrow night
Nov 29 - Nov 30
This weekend
Nov 29 - Dec 1
Next weekend
Dec 6 - Dec 8

Filter by

Guest rating
Guest rating
Star rating

Top 10 Ayios Thomas hotels and places to stay

Triton Authentic Cretan Hotel
Beach nearby, sun loungers, beach umbrellas

Triton Authentic Cretan Hotel

4.0 star property
8.6 out of 10, Excellent, (9)
"Wir kommen gerne wieder "
The price is CA $105
CA $124 total
includes taxes & fees
Dec 13 - Dec 14
Triton Authentic Cretan Hotel
Idi Hotel
Outdoor pool, sun loungers

Idi Hotel

2.0 star property
9.0 out of 10, Wonderful, (69)
"The IDI hotel is a great place to stay From breakfast to the restaurant and the accommodations. They are all top notch Thank you"
Idi Hotel
Hariklia Rent Rooms
Traditional Twin Room, 2 Single Beds | Terrace/patio

Hariklia Rent Rooms

8.6 out of 10, Excellent, (28)
"Thank You Frosso"
Hariklia Rent Rooms
Keramos
Balcony

Keramos

2.0 star property
9.4 out of 10, Exceptional, (77)
"Simple room but a very gracious owner. We don't speak Greek and she didn't speak English but she prepared a lovely dinner for us. We felt like we had become part of her family."
Keramos
San Georgio Hotel
Exterior

San Georgio Hotel

8.6 out of 10, Excellent, (9)
"Great people, great service, great location, great accommodations. Nothing to complain about. Highly recommend."
The price is CA $70
CA $82 total
includes taxes & fees
Dec 29 - Dec 30
San Georgio Hotel
KaliVie Bio Farm & Retreat
Aerial view

KaliVie Bio Farm & Retreat

10.0 out of 10, Exceptional, (1)
"Wel erg basic, door douche naast wc (alles nat) en geen gemakkelijke stoelen in de kamer. Maar verder heerlijk privé met schitterend dakterras. Vanwege de heerlijke temperatuur en de ruime tuin kan je continue als Adam en Eva rondlopen. De gastheer Fanis was erg behulpzaam met tips en loste problemen snel op."
KaliVie Bio Farm & Retreat
Pyrgi Cretan Living & Spa
Restaurant

Pyrgi Cretan Living & Spa

Pyrgi Cretan Living & Spa
Cozy home!
Outdoor pool

Cozy home!

10.0 out of 10, Exceptional, (3)
"Vivi's Apartment ist ein Ort zum Krafttanken. Alles Notwendige ist vorhanden, man kann sich rundum wohlfühlen. Vivi ist unglaublich liebevoll und verwöhnt auf sehr fröhliche Art ihre Gäste auch in ihrer Taverne. Wir hatten einen wunderschönen Urlaub und kommen gern wieder."
Cozy home!
Amazing Stone villa
Terrace/patio

Amazing Stone villa

10.0 out of 10, Exceptional, (8)
"If you're looking for a lovely authentic Cretan experience, I can highly recommend staying at the Amazing Stone Villa. Yiannis and Mary, the owners, were both lovely and welcoming. Maria's Tavern is a must if you stay. We enjoyed climbing near Kapetaniana and Agiofarango. "
Amazing Stone villa
A house by the sea.
Outdoor dining

A house by the sea.

10.0 out of 10, Exceptional, (37)
"We loved staying in Tsoutsouros- the house was perfect for our family- v. close to the sea with everything we needed. Lots of good cafes and restaurants nearby. We really enjoyed the meal Eleni cooked for us. "
A house by the sea.
Hercules House in Tsoutsouras
House, Smoking

Hercules House in Tsoutsouras

Hercules House in Tsoutsouras
Nana Apartments
Beach

Nana Apartments

10.0 out of 10, Exceptional, (11)
"Very nice mezonete house in Zaros. The host, Dimitris, went above and beyond to make our stay great."
Nana Apartments
Farm House in Bio Orange Plantation
Garden

Farm House in Bio Orange Plantation

Farm House in Bio Orange Plantation
Villa Tsapakis
Daily to-go breakfast (EUR 5 per person)

Villa Tsapakis

3.0 star property
10.0 out of 10, Exceptional, (1)
Villa Tsapakis
Seaside Apartments-Pasifai
Property grounds

Seaside Apartments-Pasifai

9.4 out of 10, Exceptional, (10)
"We were unable to stay at Dimitris’ property. No problem with postponement. In the end Dimitris graciously refunded our payment in full .We really hope to stay at this property in the future once things are back to normal. Thank you Dimitris."
Seaside Apartments-Pasifai
Amazing stone villa with Cretan traditional and vitage decoration
Beach

Amazing stone villa with Cretan traditional and vitage decoration

10.0 out of 10, Exceptional, (11)
"Un accueil chaleureux dans une maison magnifique, que demander de plus? Ajoutez à cela, la tranquillité, la gentillesse et l’empressement de notre hôte, la splendeur naturelle des paysages de la région, la mer à proximité, la baignade… Un séjour vraiment inoubliable."
Amazing stone villa with Cretan traditional and vitage decoration
Boutique villa for 6 people, new build, sea view, close to the beach
Beach nearby

Boutique villa for 6 people, new build, sea view, close to the beach

The price is CA $369
CA $413 total
includes taxes & fees
Nov 29 - Nov 30
Boutique villa for 6 people, new build, sea view, close to the beach
Undescribed Paradise: House on an amazing beach
Property grounds

Undescribed Paradise: House on an amazing beach

9.4 out of 10, Exceptional, (16)
"While we were a little surprised at the ruggedness of the trail to the beach, everything else was wonderful. John was friendly, responsive to our requests, a very gracious host. Lots of little amenities to make our stay easy. "
Undescribed Paradise: House on an amazing beach
New stone house near the beach
Beach nearby

New stone house near the beach

9.0 out of 10, Wonderful, (14)
"1) The house is close to the beach (.3k), and easy to access and park at; 2) The contact person, Gabriela, was very kind; 3) The downstairs guest, Andrea, was a terrific neighbour; 4) The yard and area was clean and well cared for; 5) I so needed the chips and water when I arrived - greatly appreciated! Suggestions: A) The mattress for so hard I used all the bed pillows in the apartment to lay on or I couldn't sleep B) The listing should explain better that the house has 2 apartments. C) There...
New stone house near the beach
Villa Belladonna - A stone-built villa with heated swimming pool
Outdoor dining

Villa Belladonna - A stone-built villa with heated swimming pool

10.0 out of 10, Exceptional, (16)
"Wonderful villa, fantastic host, beautiful location. Would highly recommend."
Villa Belladonna - A stone-built villa with heated swimming pool
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Don't see what you're looking for?
See all available properties in Ayios Thomas
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free
Beautiful view of the beach with palm trees

Black Friday: Members save 30%+

Members save 30%+ on selected hotels until December 4 with our Black Friday deals. Stay by December 15, 2025.
Unlock Black Friday deals

Frequently asked questions

Where is the best place to stay in Ayios Thomas?

Located 14.7 mi (23.7 km) from the heart of Ayios Thomas, Sofia Hotel is a top choice for your stay based on our traveler data. Other good choices for your trip to the area are Agapi Beach Resort - Premium All Inclusive and GDM Megaron Historical Monument Hotel. See all available top hotels, or vacation rentals in Ayios Thomas.

What are some of the best vacation home rentals in Ayios Thomas?

Quiet place for special vacations for couples!: Visitors like this Ayios Thomas vacation home rental. It is located in the mountains and has a patio, a spa tub, and a barbecue grill to put you at ease in your new surroundings. Kitchen amenities include a fridge, an oven, and a microwave. See all vacation rentals in Ayios Thomas.

If I need to cancel my hotel reservation in Ayios Thomas, will I receive a refund?

Yes, most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of your check-in date. If your reservation is non-refundable, it may still be possible to cancel it and get a refund within 24 hours of booking. Filter your search by fully refundable to find flexible hotel deals in Ayios Thomas.

Where can I learn more about changing or cancelling my trip to Ayios Thomas?

To find more details about changing or cancelling your trip to Ayios Thomas, head over to our customer service page.

What are some hotels with pools in Ayios Thomas?

Agapi Beach Resort - All Inclusive: Provides 3 outdoor pools, a children's pool, and a private beach. Galaxy Hotel Iraklio and GDM Megaron Historical Monument Hotel are a couple of other choices that offer an onsite pool. View all hotels with pools in Ayios Thomas.

What is the best spa hotel in Ayios Thomas?

Villa Panona in the Center of Crete

What is the best hotel near Nikos Kazantzakis Airport (HER)?

Sofia Hotel is a popular 3-star hotel featuring free extended parking and a restaurant. It's located a short 0.8 mi (1.2 km) from Nikos Kazantzakis Airport. Other options close to the airport are Pasiphae Hotel and Life Boutique Hotel.

What's it like to stay in Ayios Thomas?

Visitors are sure to enjoy all that Ayios Thomas has to offer. A top sight in the area is Heraklion Port. There are 2641 hotels and other accommodations in the surrounding area. Find out more about Ayios Thomas.

What are the top places to visit in Ayios Thomas?

Heraklion Port is a notable place to visit in the area. You'll also find Fourni and Knossos Archaeological Site in the area. Check out what more to see and do in Expedia's Ayios Thomas guide.

What's the weather like in Ayios Thomas?

The hottest months are usually July and August with an average temp of 77°F, while the coldest months are January and February with an average of 55°F. Average annual precipitation for Ayios Thomas is 14 inches.